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Amber |
Molecular Dynamics: Assisted Model Building with Energy Refinement |
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Apache Ant |
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. |
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ATLAS |
Automatically Tuned Linear Algebra Software |
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AUTO |
AUTO is a software for continuation and bifurcation problems in ordinary differential equations. |
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AutoDock |
A suite of automated docking tools |
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AutoDock-Vina |
Open source molecular docking program |
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Basic Linear Algebra Subroutines |
Building block routines for performing basic vector and matrix operations. |
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Berkeley UPC - Unified Parallel C |
Unified Parallel C (UPC) is an extension of the C programming language designed for high performance computing on large-scale parallel machines. |
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BioPerl |
Open source bioinformatics toolkit |
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BLACS |
Basic Linear Algebra Communication Subprograms |
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BLASTZ |
A genome alignment tool |
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BoxShade |
BOXSHADE is a program for pretty-printing multiple alignment output. |
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Cern Program Library |
The CERN Program Library is a large collection of general purpose libraries |
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Chaco |
Chaco is a multi-level graph partitioning package |
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Charm |
Charm++ is a parallel object-oriented programming language based on C++. |
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CLHEP - A Class Library for High Energy Physics |
CLHEP - A Class Library for High Energy Physics |
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Climate Data Operators |
NetCDF aware Common Data Operators |
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CLISP |
This is GNU CLISP - an ANSI Common Lisp Implementation |
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ClustalW |
ClustalW produces biologically meaningful multiple sequence alignments of divergent sequences. |
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Cmake |
Cross platform build system |
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Condor High Throughput Computing |
Condor is a specialized workload management system for compute-intensive jobs. |
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CPMD |
Car-Parrinello Molecular Dynamics w/ MPI & SMP |
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CRI-MAP |
The main purpose of CRI-MAP is to allow rapid, largely automated construction of multilocus linkage maps |
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CVS - Concurrent Versions System |
CVS is a version control system, an important component of Source Configuration Management (SCM). |
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DLV |
DLV is a deductive database system, based on disjunctive logic programming, which offers front-ends to several advanced KR formalisms. |
